Importing from bibtex files

Many users will want to import a library from a bibtex file that another program such as zotero, mendeley or jabref will have exported. These programs usually have a field called FILE or file that points to a path where the document file can be found.

To import such a library you can use a provided script originally intended for zotero which is, however, general enough to work for other programs too.

To install this script you can copy the file papis-zotero in the repository’s example directory to your papis config/scripts directory.

You can do this automatically issuing the following commands

wget -O ~/.config/papis/scripts/papis-zotero https://raw.githubusercontent.com/alejandrogallo/papis/master/examples/scripts/papis-zotero
chmod +x ~/.config/papis/scripts/papis-zotero

Now the zotero script is accessible from papis:

papis zotero -h

If you have a bibtex somewhere in your computer, you can use the script:

papis zotero library.bib

Warning

Note that if your bibtex file has some pdf entries, i.e., it looks like:

@article{Einstein1905Photon,
  author = { A. Einstein },
  doi = { 10.1002/andp.19053220607 },
  journal = { Ann. Phys. },
  pages = { 132--148 },
  title = { Über einen die Erzeugung und Verwandlung des Lichtes betreffenden heuristischen Gesichtspunkt },
  FILE = { path/to/some/relative/file.pdf },
  volume = { 322 },
  year = { 1905 },
}

then papis-zotero will interpret the path of the FILE entry as a relative path, so you should run the command from where this relative path makes sense.

Importing from zotero sqlite file

There is also a script that decodes the zotero.sqlite sqlite file that zotero uses to manage documents and creates papis Documents out of it.

This script will retrieve the documents from zotero (be it pdf documents or something else) and important information like tags.

wget -O ~/.config/papis/scripts/papis-zotero-sql https://raw.githubusercontent.com/alejandrogallo/papis/master/examples/scripts/papis-zotero-sql
chmod +x ~/.config/papis/scripts/papis-zotero-sql

Now you have to go to the directory where zotero saves all the information, it would look something like this on linux systems:

cd ~/.mozilla/firefox/zqb7ju1q.default/zotero

Maybe the path is slightly different. It may vary from version to version from zotero. In the zotero data directory there should be a file called zotero.sqlite and there might be a storage directory with document data inside. These will be used by zotero-sql to retrieve information and files from.

Now you can use the script through

papis zotero-sql

This script by default will create a directory named Documents (in your current directory) where papis documents are stored. You can add these document by simply moving them to your library folder

mv Documents/*      /path/to/your/papis/library

or also by adding them through papis using the folder flag

papis add --from-folder Documents/ZOTERO_ID

or write a bash for-loop to do it with all the converted documents

for folder in Documents/* ; do papis add --from-folder $folder ; done

Warning

Please be aware that the database structure of zotero is version dependent and this script might not work fully with your version. You can check issue #18 for more information.